bin/alimask
bin/hmmalign
bin/hmmbuild
bin/hmmconvert
bin/hmmemit
bin/hmmfetch
bin/hmmlogo
bin/hmmpgmd
bin/hmmpgmd_shard
bin/hmmpress
bin/hmmscan
bin/hmmsearch
bin/hmmsim
bin/hmmstat
bin/jackhmmer
bin/makehmmerdb
bin/nhmmer
bin/nhmmscan
bin/phmmer
man/man1/alimask.1.gz
man/man1/hmmalign.1.gz
man/man1/hmmbuild.1.gz
man/man1/hmmc2.1.gz
man/man1/hmmconvert.1.gz
man/man1/hmmemit.1.gz
man/man1/hmmer.1.gz
man/man1/hmmfetch.1.gz
man/man1/hmmlogo.1.gz
man/man1/hmmpgmd.1.gz
man/man1/hmmpgmd_shard.1.gz
man/man1/hmmpress.1.gz
man/man1/hmmscan.1.gz
man/man1/hmmsearch.1.gz
man/man1/hmmsim.1.gz
man/man1/hmmstat.1.gz
man/man1/jackhmmer.1.gz
man/man1/makehmmerdb.1.gz
man/man1/nhmmer.1.gz
man/man1/nhmmscan.1.gz
man/man1/phmmer.1.gz
%%PORTDOCS%%%%DOCSDIR%%/Userguide.pdf
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/7LESS_DROME
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/HBB_HUMAN
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/MADE1.hmm
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/MADE1.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Pkinase.hmm
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/Pkinase.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/dna_target.fa
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fn3.hmm
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fn3.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/globins4.hmm
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/globins4.sto
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/globins45.fa