--- CMakeLists.txt.orig	2021-01-15 03:44:02 UTC
+++ CMakeLists.txt
@@ -44,9 +44,10 @@ if (spoa_use_simde OR
   endif ()
 endif ()
 
-if (NOT TARGET cereal)
-  add_subdirectory(vendor/cereal EXCLUDE_FROM_ALL)
-endif ()
+#if (NOT TARGET cereal)
+#  add_subdirectory(vendor/cereal EXCLUDE_FROM_ALL)
+#endif ()
+find_package(cereal REQUIRED)
 
 add_library(${PROJECT_NAME}
   src/alignment_engine.cpp
@@ -55,19 +56,19 @@ add_library(${PROJECT_NAME}
   src/dispatcher.cpp)
 target_include_directories(${PROJECT_NAME} PUBLIC
   $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>
-  $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/vendor/simde>
-  $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/vendor/cpu_features/include>
+  #$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/vendor/simde>
+  #$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/vendor/cpu_features/include>
   $<INSTALL_INTERFACE:include>)
 target_link_libraries(${PROJECT_NAME}
-  cereal)
+  cereal::cereal)
 if (BUILD_SHARED_LIBS)
   set_property(TARGET ${PROJECT_NAME} PROPERTY SOVERSION "7.0.0")
 endif ()
 
 if (spoa_generate_dispatch)
-  if (NOT TARGET cpu_features)
-    add_subdirectory(vendor/cpu_features EXCLUDE_FROM_ALL)
-  endif ()
+  #if (NOT TARGET cpu_features)
+  #  add_subdirectory(vendor/cpu_features EXCLUDE_FROM_ALL)
+  #endif ()
 
   list(APPEND ARCHITECTURES avx2 sse4.1 sse2)
   foreach(arch IN LISTS ARCHITECTURES)
@@ -78,7 +79,7 @@ if (spoa_generate_dispatch)
       $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/vendor/simde>
       $<INSTALL_INTERFACE:include>)
     target_link_libraries(${PROJECT_NAME}_${arch}
-      cereal)
+      cereal::cereal)
     set_target_properties(${PROJECT_NAME}_${arch} PROPERTIES
       COMPILE_FLAGS "-m${arch}")
     if (BUILD_SHARED_LIBS)
@@ -92,8 +93,8 @@ if (spoa_generate_dispatch)
     ${PROJECT_NAME}_sse4.1
     ${PROJECT_NAME}_sse2)
 
-  target_link_libraries(${PROJECT_NAME}
-    cpu_features)
+  #target_link_libraries(${PROJECT_NAME}
+  #  cpu_features)
 endif ()
 
 include(GNUInstallDirs)
@@ -110,18 +111,19 @@ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/spoa-1.pc
 
 option(spoa_build_executable "Build spoa standalone tool" OFF)
 if (spoa_build_executable)
-  if (NOT TARGET biosoup)
-    add_subdirectory(vendor/bioparser/vendor/biosoup EXCLUDE_FROM_ALL)
-  endif ()
-  if (NOT TARGET bioparser)
-    add_subdirectory(vendor/bioparser EXCLUDE_FROM_ALL)
-  endif ()
+  #if (NOT TARGET biosoup)
+  #  add_subdirectory(vendor/bioparser/vendor/biosoup EXCLUDE_FROM_ALL)
+  #endif ()
+  #if (NOT TARGET bioparser)
+  #  add_subdirectory(vendor/bioparser EXCLUDE_FROM_ALL)
+  #endif ()
   add_executable(${PROJECT_NAME}_exe
     src/main.cpp)
   target_link_libraries(${PROJECT_NAME}_exe
     ${PROJECT_NAME}
-    bioparser
-    biosoup)
+    #bioparser
+    #biosoup
+  )
   target_compile_definitions(${PROJECT_NAME}_exe PRIVATE
     SPOA_VERSION="v${PROJECT_VERSION}")
   set_property(TARGET ${PROJECT_NAME}_exe PROPERTY
@@ -134,19 +136,19 @@ endif ()
 option(spoa_build_tests "Build spoa unit tests" OFF)
 if (spoa_build_tests)
   find_package(GTest REQUIRED)
-  if (NOT TARGET biosoup)
-    add_subdirectory(vendor/bioparser/vendor/biosoup EXCLUDE_FROM_ALL)
-  endif ()
-  if (NOT TARGET bioparser)
-    add_subdirectory(vendor/bioparser EXCLUDE_FROM_ALL)
-  endif ()
+  #if (NOT TARGET biosoup)
+  #  add_subdirectory(vendor/bioparser/vendor/biosoup EXCLUDE_FROM_ALL)
+  #endif ()
+  #if (NOT TARGET bioparser)
+  #  add_subdirectory(vendor/bioparser EXCLUDE_FROM_ALL)
+  #endif ()
   include_directories(${PROJECT_SOURCE_DIR}/src)
   add_executable(${PROJECT_NAME}_test
     test/spoa_test.cpp)
   target_link_libraries(${PROJECT_NAME}_test
     ${PROJECT_NAME}
-    bioparser
-    biosoup
+    #bioparser
+    #biosoup
     GTest::Main)
   target_compile_definitions(${PROJECT_NAME}_test PRIVATE
     SPOA_DATA_PATH="${PROJECT_SOURCE_DIR}/test/data/sample.fastq.gz")