bin/bp_bioperl_application_installer
bin/bp_multi_hmmsearch
bin/bp_panalysis
bin/bp_papplmaker
bin/bp_run_neighbor
bin/bp_run_protdist
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%%PERL5_MAN3%%/Bio::DB::ESoap.3.gz
%%PERL5_MAN3%%/Bio::DB::ESoap::WSDL.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::DocSumAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::FetchAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::FetchAdaptor::species.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::GQueryAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::LinkAdaptor.3.gz
%%PERL5_MAN3%%/Bio::DB::SoapEUtilities::Result.3.gz
%%PERL5_MAN3%%/Bio::Factory::EMBOSS.3.gz
%%PERL5_MAN3%%/Bio::Installer::Clustalw.3.gz
%%PERL5_MAN3%%/Bio::Installer::EMBOSS.3.gz
%%PERL5_MAN3%%/Bio::Installer::Generic.3.gz
%%PERL5_MAN3%%/Bio::Installer::Hyphy.3.gz
%%PERL5_MAN3%%/Bio::Installer::Muscle.3.gz
%%PERL5_MAN3%%/Bio::Installer::PAML.3.gz
%%PERL5_MAN3%%/Bio::Installer::Probcons.3.gz
%%PERL5_MAN3%%/Bio::Installer::SLR.3.gz
%%PERL5_MAN3%%/Bio::Installer::TCoffee.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Amap.3.gz
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%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Clustalw.3.gz
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%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Exonerate.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Gmap.3.gz
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%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Lagan.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::MAFFT.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::MSAProbs.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Muscle.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Pal2Nal.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Probalign.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Probcons.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Proda.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::Sim4.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::StandAloneFasta.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Alignment::TCoffee.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Analysis.3.gz
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%%PERL5_MAN3%%/Bio::Tools::Run::AnalysisFactory::soap.3.gz
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%%PERL5_MAN3%%/Bio::Tools::Run::BWA.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::BWA::Config.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::BlastPlus.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Bowtie.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Bowtie::Config.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Cap3.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Coil.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::EMBOSSApplication.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::EMBOSSacd.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::ERPIN.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Ensembl.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Eponine.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::FootPrinter.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Genemark.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Genewise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Genscan.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Glimmer.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Hmmer.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Infernal.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::MCS.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Maq.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Maq::Config.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Match.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Mdust.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Meme.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Minimo.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Newbler.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phrap.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::FastTree.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Gerp.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Gumby.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::Base.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::BatchFile.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::FEL.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::REL.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Hyphy::SLAC.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::LVB.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Molphy::ProtML.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Njtree::Best.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Baseml.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Codeml.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Evolver.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PAML::Yn00.3.gz
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%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::Base.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::Consense.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::DrawGram.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::DrawTree.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::Neighbor.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::ProtDist.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::ProtPars.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::PhyloBase.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Phyml.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::QuickTree.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Raxml.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::SLR.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Phylo::Semphy.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Primate.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Primer3.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Prints.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Profile.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Promoterwise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Pseudowise.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::RNAMotif.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::RepeatMasker.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Samtools.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Samtools::Config.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Seg.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Signalp.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Simprot.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::StandAloneBlastPlus.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::StandAloneBlastPlus::BlastMethods.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::TigrAssembler.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Tmhmm.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::TribeMCL.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::Vista.3.gz
%%PERL5_MAN3%%/Bio::Tools::Run::tRNAscanSE.3.gz
%%PORTDOCS%%%%DOCSDIR%%/AUTHORS
%%PORTDOCS%%%%DOCSDIR%%/Changes
%%PORTDOCS%%%%DOCSDIR%%/INSTALL.PROGRAMS
%%PORTDOCS%%%%DOCSDIR%%/README